Core API

This section lists the stable user-facing API. Most workflows use one of the three model classes, then call setup_data(), a test method, and get_formatted_test_results(). Lower-level extension points and backend classes are documented separately in Advanced Options.

The pages below split the API by how users usually work with SPLISOSM, so the left navigation stays compact while still exposing the main public methods.

• Core Classes
  • SplisosmNP
  • SplisosmFFT
  • SplisosmGLMM
• Helper Functions
  • Data preparation
  • Standalone tests
  • HSIC and Liu helpers
• SpatialData Loaders
  • load_visium_sp_meta()
  • load_visium_probe()
  • load_visiumhd_probe()
  • load_xenium_codeword()